Package org.biojava.nbio.structure.symmetry.core
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Interface Summary Interface Description QuatSymmetrySolver -
Class Summary Class Description C2RotationSolver HelicalRepeatUnit Helix HelixExtender HelixLayers HelixSolver PermutationGroup QuatSuperpositionScorer QuatSymmetryDetector Detects the symmetry (global, pseudo, internal and local) of protein structures.QuatSymmetryParameters The QuatSymmetryParameters specify the options used for the detection of quaternary symmetry in structures using theQuatSymmetryDetector.QuatSymmetryResults Holds the results of quaternary symmetry perception obtained withQuatSymmetryDetector.QuatSymmetryScores QuatSymmetrySubunits A bean to represent information about the set ofSubunits being considered for symmetry detection.Rotation RotationGroup RotationSolver Stoichiometry A utility object that describes Stoichiometry (composition of a protein assembly), determined via clustering procedureSubunitClusterer, and implements human-readable representation using various strategies.SystematicSolver -
Enum Summary Enum Description Stoichiometry.StringOverflowStrategy What to do when the number ofSubunitClusterexceeds the length of the alphabet.SymmetryPerceptionMethod Method used for symmetry perception in theQuatSymmetryDetector.