Package org.biojava.nbio.structure.align

Class ClusterAltAligs

java.lang.Object

org.biojava.nbio.structure.align.ClusterAltAligs

public class ClusterAltAligs
extends Object

A class that clusters alternative alignments according to their similarity.

Since:

1.5

Version:

%I% %G%

Author:

Andreas Prlic

Field Summary

Fields

Modifier and Type	Field	Description
static final int	DEFAULT_CLUSTER_CUTOFF

Constructor Summary

Constructors

Constructor	Description
ClusterAltAligs()

Method Summary

Modifier and Type	Method	Description
static void	cluster(AlternativeAlignment[] aligs)
static void	cluster(AlternativeAlignment[] aligs, int cutoff)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

DEFAULT_CLUSTER_CUTOFF

public static final int DEFAULT_CLUSTER_CUTOFF

See Also:

• Constant Field Values

Constructor Details

ClusterAltAligs

public ClusterAltAligs()

Method Details

cluster

public static void cluster(AlternativeAlignment[] aligs)

cluster

public static void cluster(AlternativeAlignment[] aligs,
 int cutoff)