Package org.biojava.nbio.structure.align
package org.biojava.nbio.structure.align
Classes for the alignment of structures. This is the unpublished legacy implementation from the time,
before BioJava supported CE and FATCAT alignments.
See the StructurePairAligner for an example.
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ClassDescriptionWrapper for the BioJava Structure Alignment ImplementationSimple Callable Class that calculates a pairwise alignment in a different thread, so that multiple pairwise alignments can be run in parallel (examples: all-to-all alignments, DB search alignments).A class that clusters alternative alignments according to their similarity.Interface for the Multiple Structure Alignment Algorithms.A class that contains all the parameters of the structure alignment algorithm.Perform a pairwise protein structure superimposition.