Uses of Package
org.biojava.nbio.structure.align.multiple
Packages that use org.biojava.nbio.structure.align.multiple
Package
Description
Classes for the alignment of structures.
Utility methods for better interaction with Jmol.
Serialization and deserialization for structure alignment results (as AFPChain object) to XML.
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Classes in org.biojava.nbio.structure.align.multiple used by org.biojava.nbio.structure.alignClassDescriptionA MultipleAlignment is a Data Structure to store the core information of a multiple structure alignment, as a return type.
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Classes in org.biojava.nbio.structure.align.multiple used by org.biojava.nbio.structure.align.guiClassDescriptionA MultipleAlignment is a Data Structure to store the core information of a multiple structure alignment, as a return type.
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Classes in org.biojava.nbio.structure.align.multiple used by org.biojava.nbio.structure.align.gui.aligpanelClassDescriptionA MultipleAlignment is a Data Structure to store the core information of a multiple structure alignment, as a return type.
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Classes in org.biojava.nbio.structure.align.multiple used by org.biojava.nbio.structure.align.gui.jmolClassDescriptionA MultipleAlignment is a Data Structure to store the core information of a multiple structure alignment, as a return type.
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Classes in org.biojava.nbio.structure.align.multiple used by org.biojava.nbio.structure.align.multipleClassDescriptionAbstact implementation of the
ScoresCachewith the shared code used in all objects with a variables cache.A Block is a Data Structure that stores aligned positions of aMultipleAlignmentwith the condition that residues are in a sequential order.General implementation of aBlockthat supports any type of sequential alignment with gaps.A BlockSet is a Data Structure to store a flexible alignment part of a multiple alignment.A general implementation of a BlockSet to store a flexible part of a multiple alignment.A MultipleAlignment is a Data Structure to store the core information of a multiple structure alignment, as a return type.A MultipleAlignmentEnsemble is a collection ofMultipleAlignments that share the same structures (Atoms) and creation properties (algorithm, version, creation time, etc.).A general implementation of aMultipleAlignmentEnsemble.A general implementation of aMultipleAlignment.Interface for classes which implement a temporary cache for various numeric scores, e.g. -
Classes in org.biojava.nbio.structure.align.multiple used by org.biojava.nbio.structure.align.multiple.mcClassDescriptionA MultipleAlignment is a Data Structure to store the core information of a multiple structure alignment, as a return type.
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Classes in org.biojava.nbio.structure.align.multiple used by org.biojava.nbio.structure.align.multiple.utilClassDescriptionA Block is a Data Structure that stores aligned positions of a
MultipleAlignmentwith the condition that residues are in a sequential order.A MultipleAlignment is a Data Structure to store the core information of a multiple structure alignment, as a return type.A MultipleAlignmentEnsemble is a collection ofMultipleAlignments that share the same structures (Atoms) and creation properties (algorithm, version, creation time, etc.). -
Classes in org.biojava.nbio.structure.align.multiple used by org.biojava.nbio.structure.align.quaternaryClassDescriptionA MultipleAlignment is a Data Structure to store the core information of a multiple structure alignment, as a return type.
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Classes in org.biojava.nbio.structure.align.multiple used by org.biojava.nbio.structure.align.xmlClassDescriptionA Block is a Data Structure that stores aligned positions of a
MultipleAlignmentwith the condition that residues are in a sequential order.A BlockSet is a Data Structure to store a flexible alignment part of a multiple alignment.A MultipleAlignment is a Data Structure to store the core information of a multiple structure alignment, as a return type.A MultipleAlignmentEnsemble is a collection ofMultipleAlignments that share the same structures (Atoms) and creation properties (algorithm, version, creation time, etc.).Interface for classes which implement a temporary cache for various numeric scores, e.g. -
Classes in org.biojava.nbio.structure.align.multiple used by org.biojava.nbio.structure.clusterClassDescriptionA MultipleAlignment is a Data Structure to store the core information of a multiple structure alignment, as a return type.
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Classes in org.biojava.nbio.structure.align.multiple used by org.biojava.nbio.structure.symmetry.internalClassDescriptionA MultipleAlignment is a Data Structure to store the core information of a multiple structure alignment, as a return type.
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Classes in org.biojava.nbio.structure.align.multiple used by org.biojava.nbio.structure.symmetry.utilsClassDescriptionA MultipleAlignment is a Data Structure to store the core information of a multiple structure alignment, as a return type.