BioJava:Download 3.0.4

This page offers downloads for the BioJava 3.0.4 release.

BioJava 3.0.4 requires Java 1.6 or later.

About

BioJava 3.0.4 has been released and is available using Maven from http://biojava.org/download/maven/

New Features

- This is mainly a bug fix release addressing issues in the protein structure and disorder modules
- One new feature: SCOP data can now be either accessed from the original SCOP site in the UK or the Berkeley version.

View the page for a list of current modules.

Maven Download

BioJava 3.0.4 requires Maven for the build process. We are providing a BioJava specific Maven repository at http://biojava.org/download/maven/ .

You can add the BioJava repository by adding the following XML to your project pom.xml file:

        <dependencies>
                ...
                <dependency>
                        <groupId>org.biojava</groupId>
                        <artifactId>biojava3-core</artifactId>
                        <version>3.0.4</version>
                </dependency>
                <!-- other biojava jars as needed -->
        </dependencies>
    <repositories>
        ...
        <repository>
            <id>biojava-maven-repo</id>
            <name>BioJava repository</name>
            <url>http://www.biojava.org/download/maven/</url>           
        </repository>
    </repositories>

Manual Download

.tar.gz containing all jars, source and javadocs: biojava-3.0.4-all

Module Binary Jar Source Jar Javadoc Jar
biojava3-core biojava3-core-3.0.4.jar biojava3-core-3.0.4-sources.jar biojava3-core-3.0.4-javadoc.jar
biojava3-alignment biojava3-alignment-3.0.4.jar biojava3-alignment-3.0.4-sources.jar biojava3-alignment-3.0.4-javadoc.jar
biojava3-genome biojava3-genome-3.0.4.jar biojava3-genome-3.0.4-sources.jar biojava3-genome-3.0.4-javadoc.jar
biojava3-structure biojava3-structure-3.0.4.jar biojava3-structure-3.0.4-sources.jar biojava3-structure-3.0.4-javadoc.jar
biojava3-structure-gui biojava3-structure-gui-3.0.4.jar biojava3-structure-gui-3.0.4-sources.jar biojava3-structure-gui-3.0.4-javadoc.jar
biojava3-phylo biojava3-phylo-3.0.4.jar biojava3-phylo-3.0.4-sources.jar biojava3-phylo-3.0.4-javadoc.jar
biojava3-modfinder biojava3-modfinder-3.0.4.jar biojava3-modfinder-3.0.4-sources.jar biojava3-modfinder-3.0.4-javadoc.jar
biojava3-ws biojava3-ws-3.0.4.jar biojava3-ws-3.0.4-sources.jar biojava3-ws-3.0.4-javadoc.jar
biojava3-aa-prop biojava3-aa-prop-3.0.4.jar biojava3-aa-prop-3.0.4-sources.jar biojava3-aa-prop-3.0.4-javadoc.jar
biojava3-protein-disorder biojava3-protein-disorder-3.0.4.jar biojava3-protein-disorder-3.0.4-sources.jar biojava3-protein-disorder-3.0.4-javadoc.jar

Browse API docs

You can also browse the documentation at BioJava 3.0.4 api

Release Date

BioJava 3.0.4 has been released on May 21st 2012

Getting older versions

  • The legacy release of 3.0.3 can be found here (requires Java 1.6+)
  • The legacy release of 3.0.2 can be found here (requires Java 1.6+)
  • The legacy release of 3.0.1 can be found here (requires Java 1.6+)
  • The legacy release of 3.0 can be found here (requires Java 1.5+)
  • The legacy release of 1.8 can be found here (requires Java 1.5+)
  • The legacy release of 1.7.1 can be found here (requires Java 1.5+)
  • The legacy release of 1.7 can be found here (requires Java 1.5+)
  • The legacy release of 1.6 can be found here (requires Java 1.5+)
  • The legacy release of 1.5 can be found here (requires Java 1.4.2+)
  • The legacy release of 1.4 can be found here
  • The legacy release 1.3 can be found here.
  • Older releases of BioJava can be found in the download area.