BioJava:Download 3.0.8
This page offers downloads for the BioJava 3.0.8 release.
BioJava 3.0.8 requires Java 1.6 or later.
About
BioJava 3.0.8 has been released and is available using Maven from https://github.com/biojava/maven-repo/tree/master//
New Features
This release includes a lot of new features as well as numerous bug fixes and improvements.
New Features:
- new Genbank writer
- new parser for Karyotype file from UCSC
- new parser for Gene locations from UCSC
- new parser for Gene names file from genenames.org
- new module for Cox regression code for survival analysis
- new calculation of accessible surface area (ASA)
- new module for parsing .OBO files (ontologies)
- improved representation of SCOP and Berkeley-SCOP classifications
View the
Maven Download
BioJava 3.0.8 requires Maven for the build process. We are providing a BioJava specific Maven repository at http://biojava.org/download/maven/ .
You can add the BioJava repository by adding the following XML to your project pom.xml file:
<dependencies>
...
<dependency>
<groupId>org.biojava</groupId>
<artifactId>biojava3-core</artifactId>
<version>3.0.8</version>
</dependency>
<!-- other biojava jars as needed -->
</dependencies>
<repositories>
...
<repository>
<id>biojava-legacy-repo</id>
<name>BioJava's Git based legacy maven repo</name>
<url>https://github.com/biojava/maven-repo/raw/master/</url>
</repository>
</repositories>
Manual Download
.tar.gz containing all jars, source and javadocs: biojava-3.0.8-all
Browse API docs
You can also browse the documentation at BioJava 3.0.8 api
Release Date
BioJava 3.0.8 has been released on March 25th 2014
Getting older versions
- The legacy release of 3.0.7 can be found here (requires Java 1.6+)
- The legacy release of 3.0.6 can be found here (requires Java 1.6+)
- The legacy release of 3.0.5 can be found here (requires Java 1.6+)
- The legacy release of 3.0.4 can be found here (requires Java 1.6+)
- The legacy release of 3.0.3 can be found here (requires Java 1.6+)
- The legacy release of 3.0.2 can be found here (requires Java 1.6+)
- The legacy release of 3.0.1 can be found here (requires Java 1.6+)
- The legacy release of 3.0 can be found here (requires Java 1.5+)
- The legacy release of 1.9.0 can be found here (requires Java 1.5+)
- The legacy release of 1.8.5 can be found here (requires Java 1.5+)
- The legacy release of 1.8.4 can be found here (requires Java 1.5+)
- The legacy release of 1.8.2 can be found here (requires Java 1.5+)
- The legacy release of 1.8.1 can be found here (requires Java 1.5+)
- The legacy release of 1.7.1 can be found here (requires Java 1.5+)
- The legacy release of 1.7 can be found here (requires Java 1.5+)
- The legacy release of 1.6 can be found here (requires Java 1.5+)
- The legacy release of 1.5 can be found here (requires Java 1.4.2+)
- The legacy release of 1.4 can be found here
- The legacy release 1.3 can be found here.
- Older releases of BioJava can be found in the download area.