BioJava:Download 3.1.0
This page offers downloads for the BioJava 3.1.0 release.
BioJava 3.1.0 requires Java 6 or 7.
About
BioJava 3.1.0 has been released and is available using Maven from https://github.com/biojava/maven-repo/tree/master//
New Features
This release includes several new features and bug fixes back-ported from ongoing development on version 4.0.0, which will mark the first major release to use semantic versioning.
New Features:
- CE-CP version 1.4, with additional parameters
- Update to SCOPe 2.04
- Improvements in FASTQ parsing
- Fix bugs in PDB parsing
- Minor fixes in structure alignments
View the
Maven Download
BioJava 3.1.0 requires Maven for the build process. We are providing a BioJava specific Maven repository at http://biojava.org/download/maven/ .
You can add the BioJava repository by adding the following XML to your project pom.xml file:
<dependencies>
...
<dependency>
<groupId>org.biojava</groupId>
<artifactId>biojava3-core</artifactId>
<version>3.1.0</version>
</dependency>
<!-- other biojava jars as needed -->
</dependencies>
<repositories>
...
<repository>
<id>biojava-legacy-repo</id>
<name>BioJava's Git based legacy maven repo</name>
<url>https://github.com/biojava/maven-repo/raw/master/</url>
</repository>
</repositories>
Manual Download
.tar.gz containing all jars, source and javadocs: biojava-3.1.0-all
Browse API docs
You can also browse the documentation at BioJava 3.1.0 api
Release Date
BioJava 3.1.0 has been released on August 25th 2014
Getting older versions
- The release of 3.0.8 can be found here (requires Java 1.6+)
- The release of 3.0.7 can be found here (requires Java 1.6+)
- The release of 3.0.6 can be found here (requires Java 1.6+)
- The release of 3.0.5 can be found here (requires Java 1.6+)
- The release of 3.0.4 can be found here (requires Java 1.6+)
- The release of 3.0.3 can be found here (requires Java 1.6+)
- The release of 3.0.2 can be found here (requires Java 1.6+)
- The release of 3.0.1 can be found here (requires Java 1.6+)
- The release of 3.0 can be found here (requires Java 1.5+)
- The legacy release of 1.9.1 can be found here (requires Java 1.5+)
- The legacy release of 1.9.0 can be found here (requires Java 1.5+)
- The legacy release of 1.8.5 can be found here (requires Java 1.5+)
- The legacy release of 1.8.4 can be found here (requires Java 1.5+)
- The legacy release of 1.8.2 can be found here (requires Java 1.5+)
- The legacy release of 1.8.1 can be found here (requires Java 1.5+)
- The legacy release of 1.7.1 can be found here (requires Java 1.5+)
- The legacy release of 1.7 can be found here (requires Java 1.5+)
- The legacy release of 1.6 can be found here (requires Java 1.5+)
- The legacy release of 1.5 can be found here (requires Java 1.4.2+)
- The legacy release of 1.4 can be found here
- The legacy release 1.3 can be found here.
- Older releases of BioJava can be found in the download area.