Feature requests and bug reports should be added as Github issues. We welcome all feature requests, both large and small.
Some example feature requests:
- Balibase [#119]
- UniProt (XML/txt)
- port the BioJava 1 Chromatogram parser to BioJava 3 [#120]
- Variation APIs that bring together Ensembl Variation, VCF file format, GFF3+GVF file format, samtools, Picard, GATK, etc. [#121]
- SCOP2 parser [#82]
There are also a number of algorithms where we would be interested in Java ports.
You can also take a look at the current list of BioJava Modules and suggest other missing features.