BioJava:CookBook:Core:Sequences
is is fairly straightforward to create sequences. Take a look at these examples:
Sequence objects can be created by providing a string representation as an input to the constructor:
java ProteinSequence seq = new
ProteinSequence("MSTNPKPQRKTKRNTNRRPQDVKFPGG");
Fetch a protein sequence based on a UniProt accession code from UniProt. ```java String uniProtID = “P26663”;
// we will tell the UniProt proxy class that we are expecting a sequence that is an amino acid AminoAcidCompoundSet set = AminoAcidCompoundSet.getAminoAcidCompoundSet();
// now load the sequence from the UniProt website
UniprotProxySequenceReader
// and make a protein sequence out of it ProteinSequence seq = new ProteinSequence(uniprotSequence); ```