I used BioJava for the BioWeka project - this was my Bachelor thesis. For this project I needed a class that read AAindex files to analyze protein sequences using symbol properties. So I’ve contributed the [http://www.bioservices.net/2005/10/aaindexstreamreader-for-biojava.html AAIndexStreamReader] class to the BioJava project. Another contributions is the [http://www.bioservices.net/2005/10/biojava-externalprocess-class.html ExternalProcess] class which is helpful if you like to execute an external program multiple times and read/write its output/input without using the filesystem but within multiple threads. Finally, I’m helping to get this Wiki online …

More information about me and my work (e.g. on XML, .NET and Bioinformatics) can be found on my homepage or just google for Martin Szugat.

Martin 12:42, 7 February 2006 (EST)