Package org.biojava.nbio.alignment

Enum Alignments.PairInProfileScorerType

java.lang.Object

java.lang.Enum<Alignments.PairInProfileScorerType>

org.biojava.nbio.alignment.Alignments.PairInProfileScorerType

All Implemented Interfaces:

Serializable, Comparable<Alignments.PairInProfileScorerType>

Enclosing class:

Alignments

public static enum Alignments.PairInProfileScorerType
extends Enum<Alignments.PairInProfileScorerType>

List of implemented sequence pair in a profile scoring routines.

Enum Constant Summary

Enum Constants

Enum Constant	Description
IDENTITIES
SIMILARITIES

Method Summary

Modifier and Type	Method	Description
static Alignments.PairInProfileScorerType	valueOf(String name)	Returns the enum constant of this type with the specified name.
static Alignments.PairInProfileScorerType[]	values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

IDENTITIES

public static final Alignments.PairInProfileScorerType IDENTITIES

SIMILARITIES

public static final Alignments.PairInProfileScorerType SIMILARITIES

Method Detail

values

public static Alignments.PairInProfileScorerType[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (Alignments.PairInProfileScorerType c : Alignments.PairInProfileScorerType.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static Alignments.PairInProfileScorerType valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null