Package org.biojava.nbio.alignment

Enum Alignments.PairwiseSequenceScorerType

java.lang.Object

java.lang.Enum<Alignments.PairwiseSequenceScorerType>

org.biojava.nbio.alignment.Alignments.PairwiseSequenceScorerType

All Implemented Interfaces:

Serializable, Comparable<Alignments.PairwiseSequenceScorerType>

Enclosing class:

Alignments

public static enum Alignments.PairwiseSequenceScorerType
extends Enum<Alignments.PairwiseSequenceScorerType>

List of implemented pairwise sequence scoring routines.

Enum Constant Summary

Enum Constants

Enum Constant	Description
GLOBAL
GLOBAL_IDENTITIES
GLOBAL_SIMILARITIES
KMERS
LOCAL
LOCAL_IDENTITIES
LOCAL_SIMILARITIES
WU_MANBER

Method Summary

Modifier and Type	Method	Description
static Alignments.PairwiseSequenceScorerType	valueOf(String name)	Returns the enum constant of this type with the specified name.
static Alignments.PairwiseSequenceScorerType[]	values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

GLOBAL

public static final Alignments.PairwiseSequenceScorerType GLOBAL

GLOBAL_IDENTITIES

public static final Alignments.PairwiseSequenceScorerType GLOBAL_IDENTITIES

GLOBAL_SIMILARITIES

public static final Alignments.PairwiseSequenceScorerType GLOBAL_SIMILARITIES

LOCAL

public static final Alignments.PairwiseSequenceScorerType LOCAL

LOCAL_IDENTITIES

public static final Alignments.PairwiseSequenceScorerType LOCAL_IDENTITIES

LOCAL_SIMILARITIES

public static final Alignments.PairwiseSequenceScorerType LOCAL_SIMILARITIES

KMERS

public static final Alignments.PairwiseSequenceScorerType KMERS

WU_MANBER

public static final Alignments.PairwiseSequenceScorerType WU_MANBER

Method Detail

values

public static Alignments.PairwiseSequenceScorerType[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (Alignments.PairwiseSequenceScorerType c : Alignments.PairwiseSequenceScorerType.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static Alignments.PairwiseSequenceScorerType valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null