Class CDSSequence

    • Constructor Detail

      • CDSSequence

        public CDSSequence​(TranscriptSequence parentSequence,
                           int bioBegin,
                           int bioEnd,
                           int phase)
        parentSequence -
        bioBegin -
        bioEnd -
        phase -
    • Method Detail

      • getCodingSequence

        public String getCodingSequence()
        A CDS sequence if negative stranded needs to be reverse complement to represent the actual coding sequence. When getting a ProteinSequence from a TranscriptSequence this method is callled for each CDSSequence {@link} {@link}
        coding sequence