Uses of Class
org.biojava.nbio.core.sequence.CDSSequence

Packages that use CDSSequence

Package	Description
org.biojava.nbio.core.sequence

Uses of CDSSequence in org.biojava.nbio.core.sequence

Methods in org.biojava.nbio.core.sequence that return CDSSequence

Modifier and Type	Method	Description
CDSSequence	TranscriptSequence.addCDS(AccessionID accession, int begin, int end, int phase)	Add a Coding Sequence region with phase to the transcript sequence
CDSSequence	TranscriptSequence.removeCDS(String accession)	Remove a CDS or coding sequence from the transcript sequence

Methods in org.biojava.nbio.core.sequence that return types with arguments of type CDSSequence

Modifier and Type	Method	Description
LinkedHashMap<String,CDSSequence>	TranscriptSequence.getCDSSequences()	Get the CDS sequences that have been added to the TranscriptSequences

Methods in org.biojava.nbio.core.sequence with parameters of type CDSSequence

Modifier and Type	Method	Description
int	CDSComparator.compare(CDSSequence o1, CDSSequence o2)	Used to sort two CDSSequences where Negative Strand makes it tough