Hierarchy For Package org.biojava.nbio.core.sequence

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • org.biojava.nbio.core.sequence.template.AbstractSequence<C> (implements org.biojava.nbio.core.sequence.template.Sequence<C>)
    • org.biojava.nbio.core.sequence.BasicSequence<C>
    • org.biojava.nbio.core.sequence.DNASequence
      • org.biojava.nbio.core.sequence.CDSSequence
      • org.biojava.nbio.core.sequence.ChromosomeSequence
      • org.biojava.nbio.core.sequence.ExonSequence
      • org.biojava.nbio.core.sequence.GeneSequence
      • org.biojava.nbio.core.sequence.IntronSequence
      • org.biojava.nbio.core.sequence.StartCodonSequence
      • org.biojava.nbio.core.sequence.StopCodonSequence
      • org.biojava.nbio.core.sequence.TranscriptSequence
    • org.biojava.nbio.core.sequence.ProteinSequence
    • org.biojava.nbio.core.sequence.RNASequence
  • org.biojava.nbio.core.sequence.AccessionID
  • org.biojava.nbio.core.sequence.CDSComparator (implements java.util.Comparator<T>, java.io.Serializable)
  • org.biojava.nbio.core.sequence.ExonComparator (implements java.util.Comparator<T>, java.io.Serializable)
  • org.biojava.nbio.core.sequence.MultipleSequenceAlignment<S,C> (implements org.biojava.nbio.core.sequence.template.LightweightProfile<S,C>)
  • org.biojava.nbio.core.sequence.SequenceComparator (implements java.util.Comparator<T>, java.io.Serializable)
  • org.biojava.nbio.core.sequence.SequenceOptimizationHints
  • org.biojava.nbio.core.sequence.TaxonomyID

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.biojava.nbio.core.sequence.DataSource
    • org.biojava.nbio.core.sequence.DNASequence.DNAType
    • org.biojava.nbio.core.sequence.SequenceOptimizationHints.SequenceCollection
    • org.biojava.nbio.core.sequence.SequenceOptimizationHints.SequenceUsage
    • org.biojava.nbio.core.sequence.Strand