Uses of Class org.biojava.nbio.core.sequence.RNASequence (biojava 6.1.0 API)

Packages that use RNASequence
Package Description

org.biojava.nbio.core.sequence

org.biojava.nbio.core.sequence.io

org.biojava.nbio.core.sequence.transcription

Uses of RNASequence in org.biojava.nbio.core.sequence

Methods in org.biojava.nbio.core.sequence that return RNASequence
Modifier and Type	Method	Description
`RNASequence`	DNASequence.`getRNASequence()`	Return the RNASequence equivalent of the DNASequence using default Transcription Engine.
`RNASequence`	DNASequence.`getRNASequence(Frame frame)`	Allows the user to pass in the Frame shift.
`RNASequence`	DNASequence.`getRNASequence(TranscriptionEngine engine)`	Allow a user to pass in a rules engine to do the DNA to RNA translation
`RNASequence`	DNASequence.`getRNASequence(TranscriptionEngine engine, Frame frame)`

Uses of RNASequence in org.biojava.nbio.core.sequence.io

Methods in org.biojava.nbio.core.sequence.io that return types with arguments of type RNASequence
Modifier and Type	Method	Description
`static LinkedHashMap<String,RNASequence>`	FastaReaderHelper.`readFastaRNASequence(File file)`
`static LinkedHashMap<String,RNASequence>`	FastaReaderHelper.`readFastaRNASequence(File file, boolean lazySequenceLoad)`	Selecting lazySequenceLoad=true will parse the FASTA file and figure out the accessionid and offsets and return sequence objects that can in the future read the sequence from the disk.
`static LinkedHashMap<String,RNASequence>`	FastaReaderHelper.`readFastaRNASequence(InputStream inStream)`	Read a fasta RNA sequence
`static LinkedHashMap<String,RNASequence>`	GenbankReaderHelper.`readGenbankRNASequence(File file)`
`static LinkedHashMap<String,RNASequence>`	GenbankReaderHelper.`readGenbankRNASequence(File file, boolean lazySequenceLoad)`	Selecting lazySequenceLoad=true will parse the Genbank file and figure out the accessionid and offsets and return sequence objects that can in the future read the sequence from the disk.
`static LinkedHashMap<String,RNASequence>`	GenbankReaderHelper.`readGenbankRNASequence(InputStream inStream)`	Read a Genbank RNA sequence

Uses of RNASequence in org.biojava.nbio.core.sequence.transcription

Methods in org.biojava.nbio.core.sequence.transcription that return RNASequence
Modifier and Type	Method	Description
`protected RNASequence`	DNAToRNATranslator.`wrapToRna(Sequence<NucleotideCompound> dna)`	Takes in the given DNA Sequence and returns an instance of RNASequence which is using `RnaSequenceView` as a `ProxySequenceReader`.