Package org.biojava.nbio.core.sequence.io.template

Interface SequenceCreatorInterface<C extends Compound>

Type Parameters:

C - the compound type

All Known Implementing Classes:

CasePreservingProteinSequenceCreator, DNASequenceCreator, FileProxyDNASequenceCreator, FileProxyProteinSequenceCreator, FileProxyRNASequenceCreator, ProteinSequenceCreator, RNASequenceCreator

public interface SequenceCreatorInterface<C extends Compound>

Author:

Scooter Willis

Method Summary

Modifier and Type	Method	Description
AbstractSequence<C>	getSequence(String sequence, long index)
AbstractSequence<C>	getSequence(List<C> list)
AbstractSequence<C>	getSequence(ProxySequenceReader<C> proxyLoader, long index)

Method Details

getSequence

AbstractSequence<C> getSequence(String sequence,
 long index)
                         throws CompoundNotFoundException,
IOException

Parameters:

sequence -

index -

Returns:

Throws:

CompoundNotFoundException

IOException

getSequence

AbstractSequence<C> getSequence(ProxySequenceReader<C> proxyLoader,
 long index)

Parameters:

proxyLoader -

index -

Returns:

getSequence

AbstractSequence<C> getSequence(List<C> list)

Parameters:

list -

Returns: