org.biojava.bio.dp

Interface TrainingAlgorithm

All Known Implementing Classes:

AbstractTrainer, BaumWelchSampler, BaumWelchTrainer

public interface TrainingAlgorithm

Author:

Matthew Pocock, Thomas Down

Method Summary

Methods

Modifier and Type	Method and Description
double	getCurrentScore()
int	getCycle()
DP	getDP()
double	getLastScore()
void	train(SequenceDB db, double nullWeight, StoppingCriteria stopper) Trains the sequences in db untill stopper says to finnish.

Method Detail

getDP

DP getDP()

getLastScore

double getLastScore()

getCurrentScore

double getCurrentScore()

getCycle

int getCycle()

train

void train(SequenceDB db,
         double nullWeight,
         StoppingCriteria stopper)
           throws IllegalSymbolException,
                  BioException

Trains the sequences in db untill stopper says to finnish.

Throws:

IllegalSymbolException

BioException