org.biojava.bio.dp.twohead

Interface CellCalculatorFactory

All Known Implementing Classes:

DPInterpreter

public interface CellCalculatorFactory

Author:

Matthew Pocock

Method Summary

Methods

Modifier and Type	Method and Description
CellCalculator	backwards(ScoreType scoreType)
CellCalculator	forwards(ScoreType scoreType)
CellCalculator	viterbi(ScoreType scoreType, BackPointer terminal)

Method Detail

forwards

CellCalculator forwards(ScoreType scoreType)
                        throws IllegalSymbolException,
                               IllegalAlphabetException,
                               IllegalTransitionException

Throws:

IllegalSymbolException

IllegalAlphabetException

IllegalTransitionException

backwards

CellCalculator backwards(ScoreType scoreType)
                         throws IllegalSymbolException,
                                IllegalAlphabetException,
                                IllegalTransitionException

Throws:

IllegalSymbolException

IllegalAlphabetException

IllegalTransitionException

viterbi

CellCalculator viterbi(ScoreType scoreType,
                     BackPointer terminal)
                       throws IllegalSymbolException,
                              IllegalAlphabetException,
                              IllegalTransitionException

Throws:

IllegalSymbolException

IllegalAlphabetException

IllegalTransitionException