org.biojava.bio.dp.twohead

Interface PairDPCursor

All Known Implementing Classes:

AbstractMatrixPairDPCursor, BackMatrixPairDPCursor, LightPairDPCursor, MatrixPairDPCursor

public interface PairDPCursor

A cursor over a DP matrix.

Author:

Matthew Pocock

Method Summary

Methods

Modifier and Type	Method and Description
int[]	getDepth() retrieve the depth of this cursor
boolean	hasNext() test wether the cursor can be advanced further
void	next(Cell[][] cells) retrieve the next block of cells
Cell[][]	press() press out a new correctly sized cell array

Method Detail

hasNext

boolean hasNext()

test wether the cursor can be advanced further

next

void next(Cell[][] cells)
          throws IllegalSymbolException

retrieve the next block of cells

Throws:

IllegalSymbolException

press

Cell[][] press()

press out a new correctly sized cell array

getDepth

int[] getDepth()

retrieve the depth of this cursor