Uses of Interface
org.biojava.bio.gui.sequence.PairwiseRenderContext

Packages that use PairwiseRenderContext

Package	Description
org.biojava.bio.gui.sequence	Graphical displays of biological sequences and associated annotations.

Uses of PairwiseRenderContext in org.biojava.bio.gui.sequence

Classes in org.biojava.bio.gui.sequence that implement PairwiseRenderContext

Modifier and Type	Class and Description
class	PairwiseSequencePanel A PairwiseSequencePanel is a panel that displays a pair of sequences; one sequence (the primary) may be either left-to-right (HORIZONTAL) or from top-to-bottom (VERTICAL).
class	SubPairwiseRenderContext SubPairwiseRenderContext is a rendering context which wraps a delegate context and effectively hides some of the delegate's properties with its own.

Methods in org.biojava.bio.gui.sequence that return PairwiseRenderContext

Modifier and Type	Method and Description
protected PairwiseRenderContext	PairwiseFilteringRenderer.getSubContext(PairwiseRenderContext context) getSubContext creates a new context which has FeatureHolders filtered using the current filter.

Methods in org.biojava.bio.gui.sequence with parameters of type PairwiseRenderContext

Modifier and Type	Method and Description
protected PairwiseRenderContext	PairwiseFilteringRenderer.getSubContext(PairwiseRenderContext context) getSubContext creates a new context which has FeatureHolders filtered using the current filter.
void	PairwiseSequenceRenderer.paint(Graphics2D g2, PairwiseRenderContext prc) paints some or all of the information about the sequence pair.
void	PairwiseOverlayRenderer.paint(Graphics2D g2, PairwiseRenderContext context) paint applies all renderers in the order in which they were added.
void	PairwiseFilteringRenderer.paint(Graphics2D g2, PairwiseRenderContext context)
void	PairwiseDiagonalRenderer.paint(Graphics2D g2, PairwiseRenderContext context) paint renders the feature as a simple line.
void	CrosshairRenderer.paint(Graphics2D g2, PairwiseRenderContext context)
SequenceViewerEvent	PairwiseSequenceRenderer.processMouseEvent(PairwiseRenderContext prc, MouseEvent me, List path) processMouseEvent produces a SequenceViewerEvent in response to a mouse gesture.
SequenceViewerEvent	PairwiseOverlayRenderer.processMouseEvent(PairwiseRenderContext context, MouseEvent me, List path) processMouseEvent produces a SequenceViewerEvent in response to a mouse gesture.
SequenceViewerEvent	PairwiseFilteringRenderer.processMouseEvent(PairwiseRenderContext context, MouseEvent me, List path)
SequenceViewerEvent	PairwiseDiagonalRenderer.processMouseEvent(PairwiseRenderContext context, MouseEvent me, List path) processMouseEvent acts on a mouse gesture.
SequenceViewerEvent	CrosshairRenderer.processMouseEvent(PairwiseRenderContext context, MouseEvent me, List path) processMouseEvent processes any MouseEvents directed to the renderer.

Constructors in org.biojava.bio.gui.sequence with parameters of type PairwiseRenderContext

Constructor and Description
SubPairwiseRenderContext(PairwiseRenderContext context, SymbolList symbols, SymbolList secondarySymbols, FeatureHolder features, FeatureHolder secondaryFeatures, RangeLocation range, RangeLocation secondaryRange) Creates a new SubPairwiseRenderContext.