Uses of Interface
org.biojava.bio.gui.sequence.PairwiseSequenceRenderer

Packages that use PairwiseSequenceRenderer

Package	Description
org.biojava.bio.gui.sequence	Graphical displays of biological sequences and associated annotations.

Uses of PairwiseSequenceRenderer in org.biojava.bio.gui.sequence

Classes in org.biojava.bio.gui.sequence that implement PairwiseSequenceRenderer

Modifier and Type	Class and Description
class	CrosshairRenderer CrosshairRenderer draws a crosshair, optionally with coordinates.
class	PairwiseDiagonalRenderer PairwiseDiagonalRenderer renders a region of similarity between two sequences as a straight line.
class	PairwiseFilteringRenderer PairwiseFilteringRenderer wraps a PairwiseSequenceRenderer and filters the PairwiseRenderContexts passed to it.
class	PairwiseOverlayRenderer PairwiseOverlayRenderer allows a list of other PairwiseSequenceRenderers to superimpose their output.

Methods in org.biojava.bio.gui.sequence that return PairwiseSequenceRenderer

Modifier and Type	Method and Description
PairwiseSequenceRenderer	PairwiseSequencePanel.getRenderer() getRenderer returns the current PairwiseSequenceRenderer.
PairwiseSequenceRenderer	PairwiseFilteringRenderer.getRenderer() getRenderer return the current renderer.

Methods in org.biojava.bio.gui.sequence with parameters of type PairwiseSequenceRenderer

Modifier and Type	Method and Description
protected void	PairwiseOverlayRenderer._addRenderer(PairwiseSequenceRenderer renderer)
protected void	PairwiseOverlayRenderer._removeRenderer(PairwiseSequenceRenderer renderer)
void	PairwiseOverlayRenderer.addRenderer(PairwiseSequenceRenderer renderer) addRenderer adds a renderer.
void	PairwiseOverlayRenderer.removeRenderer(PairwiseSequenceRenderer renderer) removeRenderer removes a renderer.
void	PairwiseSequencePanel.setRenderer(PairwiseSequenceRenderer renderer) setRenderer sets the current PairwiseSequenceRenderer.
void	PairwiseFilteringRenderer.setRenderer(PairwiseSequenceRenderer renderer) setRenderer sets the renderer.

Constructors in org.biojava.bio.gui.sequence with parameters of type PairwiseSequenceRenderer

Constructor and Description
PairwiseFilteringRenderer(PairwiseSequenceRenderer renderer) Creates a new PairwiseFilteringRenderer which uses a filter which accepts all features.
PairwiseFilteringRenderer(PairwiseSequenceRenderer renderer, FeatureFilter filter, boolean recurse) Creates a new PairwiseFilteringRenderer.
PairwiseSequenceRenderer.PairwiseRendererForwarder(PairwiseSequenceRenderer source, ChangeSupport cs) Creates a new PairwiseRendererForwarder.