Uses of Interface
org.biojava.bio.program.gff.GFFRecord

Packages that use GFFRecord

Package	Description
org.biojava.bio.program.gff	GFF manipulation.

Uses of GFFRecord in org.biojava.bio.program.gff

Classes in org.biojava.bio.program.gff that implement GFFRecord

Modifier and Type	Class and Description
class	SimpleGFFRecord A no-frills implementation of a GFFRecord.

Methods in org.biojava.bio.program.gff that return GFFRecord

Modifier and Type	Method and Description
protected GFFRecord	GFFParser.createRecord(GFFDocumentHandler handler, List aList, String rest, String comment) Actually turns a list of tokens, some value string and a comment into a GFFRecord and informs handler.

Methods in org.biojava.bio.program.gff with parameters of type GFFRecord

Modifier and Type	Method and Description
boolean	GFFRecordFilter.accept(GFFRecord record) Return whether or not to accept record.
boolean	GFFRecordFilter.AcceptAll.accept(GFFRecord record)
boolean	GFFRecordFilter.SequenceFilter.accept(GFFRecord record)
boolean	GFFRecordFilter.StrandFilter.accept(GFFRecord record)
boolean	GFFRecordFilter.SourceFilter.accept(GFFRecord record)
boolean	GFFRecordFilter.FeatureFilter.accept(GFFRecord record)
boolean	GFFRecordFilter.FrameFilter.accept(GFFRecord record)
boolean	GFFRecordFilter.NotFilter.accept(GFFRecord record)
void	GFFEntrySet.add(GFFRecord record) Add a GFFRecord to the end of this set.
void	GFFWriter.recordLine(GFFRecord record) Prints record to the PrintWriter.
void	GFFFilterer.recordLine(GFFRecord record) Only forward the GFFRecords that match a filter.
void	GFFDocumentHandler.recordLine(GFFRecord record) A record line has been encountered.

Constructors in org.biojava.bio.program.gff with parameters of type GFFRecord

Constructor and Description
SimpleGFFRecord(GFFRecord rec) Create a new SimpleGFFRecord from GFFRecord object