Uses of Interface
org.biojava.bio.program.homologene.Taxon

Packages that use Taxon

Package	Description
org.biojava.bio.program.homologene	Support classes for Homologene data.

Uses of Taxon in org.biojava.bio.program.homologene

Classes in org.biojava.bio.program.homologene that implement Taxon

Modifier and Type	Class and Description
static class	Taxon.TaxonStub

Fields in org.biojava.bio.program.homologene declared as Taxon

Modifier and Type	Field and Description
static Taxon	Taxon.A_THALIANA
static Taxon	Taxon.B_TAURUS
static Taxon	Taxon.C_ELEGANS
static Taxon	Taxon.D_MELANOGASTER
static Taxon	Taxon.D_RERIO
static Taxon	Taxon.H_SAPIENS
static Taxon	Taxon.H_VULGARE
static Taxon	Taxon.L_ESCULENTUM
static Taxon	Taxon.M_MUSCULUS
static Taxon	Taxon.M_TRUNCULATA
static Taxon	Taxon.O_SATIVA
static Taxon	Taxon.R_NORVEGICUS
static Taxon	Taxon.S_SCROFA
static Taxon	Taxon.T_AESTIVUM
static Taxon	Taxon.X_LAEVIS
static Taxon	Taxon.Z_MAYS

Methods in org.biojava.bio.program.homologene that return Taxon

Modifier and Type	Method and Description
static Taxon	HomologeneTools.createTaxon(int taxonID, String description) add a Taxon
Taxon	SimpleOrthologue.getTaxon()
Taxon	Orthologue.getTaxon() return the Taxon associated with this orthologue
static Taxon	HomologeneTools.getTaxon(int taxonID) get the Taxon corresponding to this Taxon ID

Methods in org.biojava.bio.program.homologene with parameters of type Taxon

Modifier and Type	Method and Description
Orthologue	SimpleHomologeneDB.createOrthologue(Taxon taxon, String locusID, String homologeneID, String accession)
Orthologue	HomologeneDB.createOrthologue(Taxon taxon, String locusID, String homologeneID, String accession) Create an orthologue.

Constructors in org.biojava.bio.program.homologene with parameters of type Taxon

Constructor and Description
OrthologueFilter.ByTaxon(Taxon taxon)
OrthoPairSetFilter.ByTaxon(Taxon taxon)
SimpleOrthologue(Taxon taxon, String locusID, String homologeneID, String accession)