org.biojava.bio.seq

Interface SequenceIterator

All Known Subinterfaces:

RichSequenceIterator

All Known Implementing Classes:

HashedFastaIterator, RichSequence.IOTools.SingleRichSeqIterator, RichStreamReader, StreamReader

public interface SequenceIterator

An iterator over a bag of sequences.

java.util.Iterator was not appropriate here, as we need specific exceptions to be thrown, and as much type-safety as possible. However, we have made it as compliant with Iterator as we could so that there is a minimal learning curve.

Author:

Matthew Pocock

See Also:

RichSequenceIterator

Method Summary

Methods

Modifier and Type	Method and Description
boolean	hasNext() Returns whether there are more sequences to iterate over.
Sequence	nextSequence() Returns the next sequence in the iterator.

Method Detail

hasNext

boolean hasNext()

Returns whether there are more sequences to iterate over.

Returns:

true if there are more sequences to get and false otherwise

nextSequence

Sequence nextSequence()
                      throws NoSuchElementException,
                             BioException

Returns the next sequence in the iterator.

Returns:

the next Sequence

Throws:

NoSuchElementException - if you call nextSequence when hasNext returns false

BioException - if for any reason the sequence could not be retrieved