org.biojavax.bio.seq

Class RichSequence.IOTools.SingleRichSeqIterator

java.lang.Object

org.biojavax.bio.seq.RichSequence.IOTools.SingleRichSeqIterator

All Implemented Interfaces:

SequenceIterator, BioEntryIterator, RichSequenceIterator

Enclosing class:

RichSequence.IOTools

public static final class RichSequence.IOTools.SingleRichSeqIterator
extends Object
implements RichSequenceIterator

Used to iterate over a single rich sequence

Constructor Summary

Constructors

Constructor and Description
RichSequence.IOTools.SingleRichSeqIterator(Sequence seq) Creates an iterator over a single sequence.

Method Summary

Methods

Modifier and Type	Method and Description
boolean	hasNext() Returns whether there are more sequences to iterate over.
BioEntry	nextBioEntry()
RichSequence	nextRichSequence()
Sequence	nextSequence() Returns the next sequence in the iterator.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RichSequence.IOTools.SingleRichSeqIterator

public RichSequence.IOTools.SingleRichSeqIterator(Sequence seq)

Creates an iterator over a single sequence.

Parameters:

seq - the sequence to iterate over.

Method Detail

hasNext

public boolean hasNext()

Returns whether there are more sequences to iterate over.

Specified by:

hasNext in interface SequenceIterator

Specified by:

hasNext in interface BioEntryIterator

Returns:

true if another RichSequence is available

nextSequence

public Sequence nextSequence()

Returns the next sequence in the iterator.

Specified by:

nextSequence in interface SequenceIterator

Returns:

a RichSequence

nextBioEntry

public BioEntry nextBioEntry()

Specified by:

nextBioEntry in interface BioEntryIterator

Returns:

a RichSequence

nextRichSequence

public RichSequence nextRichSequence()

Specified by:

nextRichSequence in interface RichSequenceIterator

Returns:

a RichSequence