Uses of Class
org.biojava.bio.symbol.RangeLocation

Packages that use RangeLocation

Package	Description
org.biojava.bio.gui.sequence	Graphical displays of biological sequences and associated annotations.
org.biojava.bio.gui.sequence.tracklayout	Classes for the handling of the layout of a WrappedSequencePanel.
org.biojava.bio.seq	Classes and interfaces for defining biological sequences and informatics objects.
org.biojava.bio.seq.io.game	Event-driven parsing system for the Gene Annotation Markup Elements (GAME).
org.biojava.bio.symbol	Representation of the Symbols that make up a sequence, and locations within them.

Uses of RangeLocation in org.biojava.bio.gui.sequence

Methods in org.biojava.bio.gui.sequence that return RangeLocation

Modifier and Type	Method and Description
RangeLocation	TranslatedSequencePanel.getRange() getRange returns a RangeLocation representing the region of the sequence currently being rendered.
RangeLocation	SubSequenceRenderContext.getRange()
RangeLocation	SubPairwiseRenderContext.getRange()
RangeLocation	SequenceRenderContext.getRange() The range of the SymbolList to render.
RangeLocation	SequencePoster.getRange() Deprecated.
RangeLocation	SequencePanelWrapper.getRange()
RangeLocation	SequencePanel.getRange()
RangeLocation	PairwiseSequencePanel.getRange() getRange returns a RangeLocation representing the region of the sequence currently being rendered.
RangeLocation	HeadlessRenderContext.getRange()
RangeLocation	SubPairwiseRenderContext.getSecondaryRange()
RangeLocation	PairwiseSequencePanel.getSecondaryRange() getSecondaryRange returns a RangeLocation representing the region of the secondary sequence currently being rendered.
RangeLocation	PairwiseRenderContext.getSecondaryRange() getSecondaryRange returns the range of the secondary sequence currently rendered.
RangeLocation	SequencePoster.getVisibleRange() Deprecated.

Methods in org.biojava.bio.gui.sequence with parameters of type RangeLocation

Modifier and Type	Method and Description
protected SequenceRenderContext	GappedRenderer.makeContext(SequenceRenderContext src, RangeLocation loc)
void	SequencePanelWrapper.setRange(RangeLocation loc)
void	SequencePanel.setRange(RangeLocation range)

Constructors in org.biojava.bio.gui.sequence with parameters of type RangeLocation

Constructor and Description
HeadlessRenderContext(Sequence seq, RangeLocation range, int width)
SubPairwiseRenderContext(PairwiseRenderContext context, SymbolList symbols, SymbolList secondarySymbols, FeatureHolder features, FeatureHolder secondaryFeatures, RangeLocation range, RangeLocation secondaryRange) Creates a new SubPairwiseRenderContext.
SubSequenceRenderContext(SequenceRenderContext src, SymbolList symbols, FeatureHolder features, RangeLocation range)
SubSequenceRenderContext(SequenceRenderContext src, SymbolList symbols, FeatureHolder features, RangeLocation range, int symOffset)

Uses of RangeLocation in org.biojava.bio.gui.sequence.tracklayout

Methods in org.biojava.bio.gui.sequence.tracklayout that return RangeLocation

Modifier and Type	Method and Description
RangeLocation[]	UserDefinedTrackLayout.getRanges()
RangeLocation[]	TrackLayout.getRanges()
RangeLocation[]	SimpleTrackLayout.getRanges()

Methods in org.biojava.bio.gui.sequence.tracklayout with parameters of type RangeLocation

Modifier and Type	Method and Description
void	UserDefinedTrackLayout.setRange(RangeLocation loc)
void	TrackLayout.setRange(RangeLocation loc)
void	SimpleTrackLayout.setRange(RangeLocation loc)

Constructors in org.biojava.bio.gui.sequence.tracklayout with parameters of type RangeLocation

Constructor and Description
UserDefinedTrackLayout(RangeLocation[] ranges)

Uses of RangeLocation in org.biojava.bio.seq

Methods in org.biojava.bio.seq with parameters of type RangeLocation

Modifier and Type	Method and Description
static Sequence	SequenceTools.maskSequence(Sequence seq, RangeLocation loc) Mask of a sequence.

Uses of RangeLocation in org.biojava.bio.seq.io.game

Methods in org.biojava.bio.seq.io.game with parameters of type RangeLocation

Modifier and Type	Method and Description
void	GAMETranscriptCallbackItf.reportExon(RangeLocation range, StrandedFeature.Strand strand) Allows nesting class that manages a transcript template to gain information about its extent from nested elements that represent exons.
void	GAMEFeatureSetHandler.reportExon(RangeLocation range, StrandedFeature.Strand strand)

Uses of RangeLocation in org.biojava.bio.symbol

Subclasses of RangeLocation in org.biojava.bio.symbol

Modifier and Type	Class and Description
class	MergeLocation Produced by LocationTools as a result of union operations.