Uses of Interface
org.biojava.bio.symbol.SymbolListFactory

Packages that use SymbolListFactory

Package	Description
org.biojava.bio.seq.io	Classes and interfaces for processing and producing flat-file representations of sequences.
org.biojava.bio.symbol	Representation of the Symbols that make up a sequence, and locations within them.
org.biojavax.bio.seq.io	Classes to support the I/O of RichSequence and Bioentry objects.

Uses of SymbolListFactory in org.biojava.bio.seq.io

Constructors in org.biojava.bio.seq.io with parameters of type SymbolListFactory

Constructor and Description
ChunkedSymbolListFactory(SymbolListFactory symListFactory)
ChunkedSymbolListFactory(SymbolListFactory userSymListFactory, int threshold)

Uses of SymbolListFactory in org.biojava.bio.symbol

Classes in org.biojava.bio.symbol that implement SymbolListFactory

Modifier and Type	Class and Description
class	PackedSymbolListFactory This class makes PackedSymbolLists.
class	SimpleSymbolListFactory This class makes SimpleSymbolLists.

Uses of SymbolListFactory in org.biojavax.bio.seq.io

Constructors in org.biojavax.bio.seq.io with parameters of type SymbolListFactory

Constructor and Description
SimpleRichSequenceBuilder(SymbolListFactory factory) Creates a new instance of SimpleRichSequenceBuilder with the desired symbollistfactory and threshold of zero.
SimpleRichSequenceBuilder(SymbolListFactory factory, int threshold) Creates a new instance of SimpleRichSequenceBuilder with the desired symbollistfactory and threshold.
SimpleRichSequenceBuilderFactory(SymbolListFactory fact) Creates a new instance of SimpleRichSequenceBuilderFactory
SimpleRichSequenceBuilderFactory(SymbolListFactory fact, int threshold) Creates a new instance of SimpleRichSequenceBuilderFactory that uses a specified factory for SymbolLists longer than a specified length.