org.biojavax.bio.seq.io

Class SimpleRichSequenceBuilderFactory

java.lang.Object

org.biojavax.bio.seq.io.SimpleRichSequenceBuilderFactory

All Implemented Interfaces:

SequenceBuilderFactory, RichSequenceBuilderFactory

public class SimpleRichSequenceBuilderFactory
extends Object
implements RichSequenceBuilderFactory

Generates RichSequenceBuilder objects.

Since:

1.5

Author:

Mark Schreiber, Richard Holland

See Also:

RichSequenceBuilder

Field Summary

Fields inherited from interface org.biojavax.bio.seq.io.RichSequenceBuilderFactory

FACTORY, PACKED, THRESHOLD, THRESHOLD_VALUE

Constructor Summary

Constructors

Constructor and Description
SimpleRichSequenceBuilderFactory() Creates a new instance of SimpleRichSequenceBuilderFactory
SimpleRichSequenceBuilderFactory(SymbolListFactory fact) Creates a new instance of SimpleRichSequenceBuilderFactory
SimpleRichSequenceBuilderFactory(SymbolListFactory fact, int threshold) Creates a new instance of SimpleRichSequenceBuilderFactory that uses a specified factory for SymbolLists longer than a specified length.

Method Summary

Methods

Modifier and Type	Method and Description
SequenceBuilder	makeSequenceBuilder()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SimpleRichSequenceBuilderFactory

public SimpleRichSequenceBuilderFactory()

Creates a new instance of SimpleRichSequenceBuilderFactory

SimpleRichSequenceBuilderFactory

public SimpleRichSequenceBuilderFactory(SymbolListFactory fact)

Creates a new instance of SimpleRichSequenceBuilderFactory

Parameters:

fact - the factory to use when building the SymbolList.

SimpleRichSequenceBuilderFactory

public SimpleRichSequenceBuilderFactory(SymbolListFactory fact,
                                int threshold)

Creates a new instance of SimpleRichSequenceBuilderFactory that uses a specified factory for SymbolLists longer than a specified length. Before that a SimpleSymbolListFacotry is used.

Parameters:

fact - the factory to use when building the SymbolList.

threshold - the threshold to exceed before using this factory

Method Detail

makeSequenceBuilder

public SequenceBuilder makeSequenceBuilder()

Specified by:

makeSequenceBuilder in interface SequenceBuilderFactory