Package | Description |
---|---|
org.biojava.bio.proteomics.aaindex |
Classes and interfaces to load Amino Acid Index database files.
|
org.biojava.bio.seq |
Classes and interfaces for defining biological sequences and informatics
objects.
|
org.biojava.bio.symbol |
Representation of the Symbols that make up a sequence, and locations within
them.
|
Modifier and Type | Class and Description |
---|---|
class |
AAindex
Symbol property table based on the Amino Acid Index Database.
|
Modifier and Type | Method and Description |
---|---|
SymbolPropertyTable |
SymbolPropertyTableIterator.nextTable()
Returns the next
SymbolPropertyTable
object. |
SymbolPropertyTable |
AAindexStreamReader.nextTable()
Returns the next
SymbolPropertyTable
object. |
SymbolPropertyTable |
SymbolPropertyTableDB.table(String name)
Returns the table with the specified name.
|
SymbolPropertyTable |
SimpleSymbolPropertyTableDB.table(String name)
Returns the table with the specified name.
|
Modifier and Type | Method and Description |
---|---|
void |
SimpleSymbolPropertyTableDB.addTable(SymbolPropertyTable table)
Adds a symbol property table to the database.
|
Modifier and Type | Method and Description |
---|---|
static SymbolPropertyTable |
ProteinTools.getSymbolPropertyTable(String name) |
Modifier and Type | Class and Description |
---|---|
class |
SimpleSymbolPropertyTable
Class that implements the SymbolPropertyTable interface
|
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