org.biojava.bio.symbol

Interface SymbolPropertyTable

All Known Implementing Classes:

AAindex, SimpleSymbolPropertyTable

public interface SymbolPropertyTable

class for maintaining properties associated with a symbol

Author:

Mike Jones, George Waldon

Field Summary

Fields

Modifier and Type	Field and Description
static String	AVG_MASS
static String	HYDROPATHICITY
static String	MONO_MASS
static String	PK
static String	PK_Cterm
static String	PK_Nterm

Method Summary

Methods

Modifier and Type	Method and Description
Alphabet	getAlphabet()
double	getDoubleValue(Symbol s)
String	getName()

Field Detail

AVG_MASS

static final String AVG_MASS

See Also:

Constant Field Values

MONO_MASS

static final String MONO_MASS

See Also:

Constant Field Values

PK_Nterm

static final String PK_Nterm

See Also:

Constant Field Values

PK

static final String PK

See Also:

Constant Field Values

PK_Cterm

static final String PK_Cterm

See Also:

Constant Field Values

HYDROPATHICITY

static final String HYDROPATHICITY

See Also:

Constant Field Values

Method Detail

getName

String getName()

getAlphabet

Alphabet getAlphabet()

getDoubleValue

double getDoubleValue(Symbol s)
                      throws IllegalSymbolException

Throws:

IllegalSymbolException