Uses of Interface
org.biojavax.bio.phylo.io.nexus.NexusObject

Packages that use NexusObject

Package	Description
org.biojavax.bio.phylo.io.nexus	Classes to support the I/O of Nexus files.

Uses of NexusObject in org.biojavax.bio.phylo.io.nexus

Subinterfaces of NexusObject in org.biojavax.bio.phylo.io.nexus

Modifier and Type	Interface and Description
interface	NexusBlock Represents a Nexus block.

Classes in org.biojavax.bio.phylo.io.nexus that implement NexusObject

Modifier and Type	Class and Description
class	CharactersBlock Represents Nexus characters blocks.
class	DataBlock Represents Nexus data blocks.
class	DistancesBlock Represents Nexus distances blocks.
static class	NexusBlock.Abstract
class	NexusComment Represents a Nexus comment, possibly nested.
class	TaxaBlock Represents Nexus taxa blocks.
class	TreesBlock Represents Nexus trees blocks.

Methods in org.biojavax.bio.phylo.io.nexus with parameters of type NexusObject

Modifier and Type	Method and Description
void	NexusFile.addObject(NexusObject object) Appends an object to the end of the file.
boolean	NexusFile.containsObject(NexusObject object) Checks to see if we contain an object.
void	NexusFile.insertObject(NexusObject object, int pos) Inserts an object at the given position.
void	NexusFile.removeObject(NexusObject object) Removes an object from the file.