org.biojavax.bio.seq.io

Interface RichSequenceBuilderFactory

All Superinterfaces:

SequenceBuilderFactory

All Known Implementing Classes:

SimpleRichSequenceBuilderFactory

public interface RichSequenceBuilderFactory
extends SequenceBuilderFactory

Simple factory for constructing new RichSequenceBuilder objects.

Since:

1.5

Author:

Richard Holland, Mark Schreiber

Field Summary

Fields

Modifier and Type	Field and Description
static RichSequenceBuilderFactory	FACTORY Accessor for the default factory.
static RichSequenceBuilderFactory	PACKED Accessor for a factory that produces builders that compress the SymbolList of a RichSequence.
static RichSequenceBuilderFactory	THRESHOLD Accessor for a factory that produces builders that compress the SymbolList of a RichSequence when the length of the SymbolList exceeds THRESHOLD.
static int	THRESHOLD_VALUE The value that will be used as a threshold for the THRESHOLD builder.

Method Summary

Methods inherited from interface org.biojava.bio.seq.io.SequenceBuilderFactory

makeSequenceBuilder

Field Detail

THRESHOLD_VALUE

static final int THRESHOLD_VALUE

The value that will be used as a threshold for the THRESHOLD builder. Set to 5000.

See Also:

Constant Field Values

FACTORY

static final RichSequenceBuilderFactory FACTORY

Accessor for the default factory. This implementation will not do any compression of a sequence regardless of size.

PACKED

static final RichSequenceBuilderFactory PACKED

Accessor for a factory that produces builders that compress the SymbolList of a RichSequence.

THRESHOLD

static final RichSequenceBuilderFactory THRESHOLD

Accessor for a factory that produces builders that compress the SymbolList of a RichSequence when the length of the SymbolList exceeds THRESHOLD.