Uses of Interface
org.biojavax.RankedDocRef

Packages that use RankedDocRef

Package	Description
org.biojavax	The Biojava extensions packages, classes that extend the core biojava functionality The biojavax packages contain a number of extensions to the core biojava interfaces.
org.biojavax.bio	Classes to represent biological entities and their relationships.
org.biojavax.bio.seq.io	Classes to support the I/O of RichSequence and Bioentry objects.

Uses of RankedDocRef in org.biojavax

Classes in org.biojavax that implement RankedDocRef

Modifier and Type	Class and Description
class	SimpleRankedDocRef Represents a documentary reference.

Uses of RankedDocRef in org.biojavax.bio

Methods in org.biojavax.bio that return types with arguments of type RankedDocRef

Modifier and Type	Method and Description
Set<RankedDocRef>	SimpleBioEntry.getRankedDocRefs() Returns a set of all bioentrydocrefs associated with this bioentry.
Set<RankedDocRef>	BioEntry.getRankedDocRefs() Returns a set of all bioentrydocrefs associated with this bioentry.

Methods in org.biojavax.bio with parameters of type RankedDocRef

Modifier and Type	Method and Description
void	SimpleBioEntry.addRankedDocRef(RankedDocRef docref) Adds a ranked docref instance to this bioentry.
void	BioEntry.addRankedDocRef(RankedDocRef docref) Adds a ranked docref instance to this bioentry.
void	SimpleBioEntry.removeRankedDocRef(RankedDocRef docref) Removes a ranked docref instance from this bioentry.
void	BioEntry.removeRankedDocRef(RankedDocRef docref) Removes a ranked docref instance from this bioentry.

Uses of RankedDocRef in org.biojavax.bio.seq.io

Methods in org.biojavax.bio.seq.io with parameters of type RankedDocRef

Modifier and Type	Method and Description
void	SimpleRichSequenceBuilder.setRankedDocRef(RankedDocRef ref) Call back method so the event emitter can tell the listener about a literature reference in the record being read.
void	RichSeqIOListener.setRankedDocRef(RankedDocRef ref) Call back method so the event emitter can tell the listener about a literature reference in the record being read.
void	RichSeqIOAdapter.setRankedDocRef(RankedDocRef ref)
void	DebuggingRichSeqIOListener.setRankedDocRef(RankedDocRef ref)