Class AlignmentPair

  • All Implemented Interfaces:
    Serializable, Alignment, SymbolList, Changeable

    public class AlignmentPair
    extends SimpleAlignment
    This class stores the result of an alignment procedure that creates a pairwise alignment of two sequences. Currently, these sequences must have the identical length (this may be changed in the future). A format routine produces a BLAST-like output for the sequences but all necessary information to visualize the alignment are contained in this class.
    Andreas Dräger
    See Also:
    Serialized Form