Uses of Class
org.biojava.bio.dp.SimpleMarkovModel

Packages that use SimpleMarkovModel

Package	Description
org.biojava.bio.dp	HMM and Dynamic Programming Algorithms.
org.biojava.bio.program.hmmer	Tools for working with profile Hidden Markov Models from the HMMer package.

Uses of SimpleMarkovModel in org.biojava.bio.dp

Subclasses of SimpleMarkovModel in org.biojava.bio.dp

Modifier and Type	Class	Description
class	ProfileHMM

Uses of SimpleMarkovModel in org.biojava.bio.program.hmmer

Subclasses of SimpleMarkovModel in org.biojava.bio.program.hmmer

Modifier and Type	Class	Description
class	FullHmmerProfileHMM	This is a class for representing the full HMMER generated Profile HMM (including loop states N and C terminal looping states).
class	HmmerProfileHMM	This is a class for representing HMMER generated Profile HMM.