Package org.biojava.bio.gui.sequence

Class GlyphFeatureRenderer

java.lang.Object

org.biojava.utils.AbstractChangeable

org.biojava.bio.gui.sequence.SequenceRendererWrapper

org.biojava.bio.gui.sequence.FilteringRenderer

org.biojava.bio.gui.sequence.GlyphFeatureRenderer

All Implemented Interfaces:

Serializable, FeatureRenderer, SequenceRenderer, Changeable

Direct Known Subclasses:

SecondaryStructureFeatureRenderer

public class GlyphFeatureRenderer
extends FilteringRenderer
implements FeatureRenderer

A FeatureRenderer that renders a particular Glyph for Features accepted by a particular FeatureFilter

Since:

1.5

Author:

Mark Southern, Andreas Dräger

See Also:

Glyph, Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.bio.gui.sequence.SequenceRenderer

SequenceRenderer.RendererForwarder

Field Summary

Fields

Modifier and Type	Field	Description
protected List<FeatureFilter>	fList
protected List<Glyph>	gList

Fields inherited from class org.biojava.bio.gui.sequence.FilteringRenderer

filter, FILTER, recurse, RECURSE

Fields inherited from class org.biojava.bio.gui.sequence.SequenceRendererWrapper

RENDERER

Constructor Summary

Constructors

Constructor	Description
GlyphFeatureRenderer()

Method Summary

Modifier and Type	Method	Description
void	addFilterAndGlyph(FeatureFilter ff, Glyph g)
boolean	containsFilter(FeatureFilter ff)	Returns true if the given FeatureFilter is already contained in this renderer.
double	getDepth(SequenceRenderContext src)	Returns the depth property of this class.
FeatureFilter	getFeatureFilter(int i)	Returns the ith FeatureFilter in this renderer.
Glyph	getGlyphForFilter(FeatureFilter ff)	Returns the Glyph object which is assigned to the given feature filter.
FeatureHolder	processMouseEvent(FeatureHolder fh, SequenceRenderContext src, MouseEvent me)
void	removeFilterWithGlyph(FeatureFilter ff)
void	renderFeature(Graphics2D g2, Feature f, SequenceRenderContext src)
void	setDepth(double depth)
void	setGlyphForFilter(FeatureFilter ff, Glyph glyph)	Allows setting another Glyph object to be painted for the given FeatureFilter.

Methods inherited from class org.biojava.bio.gui.sequence.FilteringRenderer

getChangeSupport, getContext, getFilter, getMinimumLeader, getMinimumTrailer, getRecurse, hasListeners, paint, processMouseEvent, setFilter, setRecurse, toString

Methods inherited from class org.biojava.bio.gui.sequence.SequenceRendererWrapper

getRenderer, setRenderer

Methods inherited from class org.biojava.utils.AbstractChangeable

addChangeListener, addChangeListener, generateChangeSupport, hasListeners, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

fList

protected List<FeatureFilter> fList

gList

protected List<Glyph> gList

Constructor Detail

GlyphFeatureRenderer

public GlyphFeatureRenderer()

Method Detail

addFilterAndGlyph

public void addFilterAndGlyph(FeatureFilter ff,
                              Glyph g)
                       throws ChangeVetoException

Throws:

ChangeVetoException

removeFilterWithGlyph

public void removeFilterWithGlyph(FeatureFilter ff)
                           throws ChangeVetoException

Throws:

ChangeVetoException

getFeatureFilter

public FeatureFilter getFeatureFilter(int i)

Returns the ith FeatureFilter in this renderer.

Parameters:

i -

Returns:

the featureFilter

containsFilter

public boolean containsFilter(FeatureFilter ff)

Returns true if the given FeatureFilter is already contained in this renderer.

Parameters:

ff -

Returns:

flag if featurefilter is contained

setGlyphForFilter

public void setGlyphForFilter(FeatureFilter ff,
                              Glyph glyph)
                       throws NoSuchElementException

Allows setting another Glyph object to be painted for the given FeatureFilter.

Parameters:

ff -

glyph -

Throws:

ChangeVetoException

NoSuchElementException

getGlyphForFilter

public Glyph getGlyphForFilter(FeatureFilter ff)
                        throws NoSuchElementException

Returns the Glyph object which is assigned to the given feature filter.

Parameters:

ff -

Returns:

Glyph object

Throws:

NoSuchElementException

setDepth

public void setDepth(double depth)

getDepth

public double getDepth(SequenceRenderContext src)

Returns the depth property of this class.

Specified by:

getDepth in interface FeatureRenderer

Specified by:

getDepth in interface SequenceRenderer

Overrides:

getDepth in class FilteringRenderer

Parameters:

src - the SequenceRenderContext to return info for

Returns:

the depth

processMouseEvent

public FeatureHolder processMouseEvent(FeatureHolder fh,
                                       SequenceRenderContext src,
                                       MouseEvent me)

Specified by:

processMouseEvent in interface FeatureRenderer

renderFeature

public void renderFeature(Graphics2D g2,
                          Feature f,
                          SequenceRenderContext src)

Specified by:

renderFeature in interface FeatureRenderer