Package org.biojava.bio.gui.sequence

Interface SequenceRenderContext

All Superinterfaces:

SwingConstants

All Known Subinterfaces:

PairwiseRenderContext

All Known Implementing Classes:

HeadlessRenderContext, PairwiseSequencePanel, SequencePanel, SequencePoster, SubPairwiseRenderContext, SubSequenceRenderContext, TranslatedSequencePanel

public interface SequenceRenderContext
extends SwingConstants

A context within which sequence information may be rendered. It encapsulates the rendering direction, the size of the leading and trailing (header/footer, left/right areas), scale and the currently rendered symbols, features and region.

Author:

Thomas Down, Matthew Pocock

Nested Class Summary

Nested Classes

Modifier and Type	Interface	Description
static class	SequenceRenderContext.Border	The metric object for the 'border' area - the area between the extent of the rendered area and the beginning or end of the sequence.

Field Summary

Fields

Modifier and Type	Field	Description
static ChangeType	LAYOUT
static ChangeType	REPAINT

Fields inherited from interface javax.swing.SwingConstants

BOTTOM, CENTER, EAST, HORIZONTAL, LEADING, LEFT, NEXT, NORTH, NORTH_EAST, NORTH_WEST, PREVIOUS, RIGHT, SOUTH, SOUTH_EAST, SOUTH_WEST, TOP, TRAILING, VERTICAL, WEST

Method Summary

Modifier and Type	Method	Description
int	getDirection()	Gets the direction in which this context expects sequences to be rendered - HORIZONTAL or VERTICAL.
FeatureHolder	getFeatures()	The features to render.
Font	getFont()	Gets the Font attribute of the SequenceRenderContext object
SequenceRenderContext.Border	getLeadingBorder()	Gets the LeadingBorder attribute of the SequenceRenderContext object.
RangeLocation	getRange()	The range of the SymbolList to render.
double	getScale()	Gets the scale as pixels per Symbol
SymbolList	getSymbols()	The SymbolList that is currently rendered by this SequenceRenderContext.
SequenceRenderContext.Border	getTrailingBorder()	Gets the TrailingBorder attribute of the SequenceRenderContext object.
int	graphicsToSequence(double d)	Converts a graphical position into a sequence coordinate.
int	graphicsToSequence(Point2D point)	Converts a graphical position into a sequence coordinate.
double	sequenceToGraphics(int i)	Converts a sequence index into a graphical coordinate.

Field Detail

REPAINT

static final ChangeType REPAINT

LAYOUT

static final ChangeType LAYOUT

Method Detail

getDirection

int getDirection()

Gets the direction in which this context expects sequences to be rendered - HORIZONTAL or VERTICAL.

Returns:

The Direction value

getScale

double getScale()

Gets the scale as pixels per Symbol

Returns:

The scale value

sequenceToGraphics

double sequenceToGraphics(int i)

Converts a sequence index into a graphical coordinate. You will need to use this in conjunction with getDirection to correctly lay graphics out.

Parameters:

i - Index within the sequence

Returns:

Equivalent graphical position in pixels

graphicsToSequence

int graphicsToSequence(double d)

Converts a graphical position into a sequence coordinate. You will need to have used getDirection to decide whether to use the x or y coordinate.

Parameters:

d - A pixel position

Returns:

The corresponding sequence index

graphicsToSequence

int graphicsToSequence(Point2D point)

Converts a graphical position into a sequence coordinate. This will use getDirection to decide whether to use the x or y coordinate.

Parameters:

point - a point representing the position

Returns:

the corresponding sequence index

getSymbols

SymbolList getSymbols()

The SymbolList that is currently rendered by this SequenceRenderContext.

Returns:

The Sequence value

getFeatures

FeatureHolder getFeatures()

The features to render.

Returns:

a FeatureHolder with the Features to render

getRange

RangeLocation getRange()

The range of the SymbolList to render.

Returns:

the RangeLocation specifying which indices (inclusive) to render

getLeadingBorder

SequenceRenderContext.Border getLeadingBorder()

Gets the LeadingBorder attribute of the SequenceRenderContext object. This represents the space between the beginning of the rendering area and the beginning of the sequence.

Returns:

The LeadingBorder value

getTrailingBorder

SequenceRenderContext.Border getTrailingBorder()

Gets the TrailingBorder attribute of the SequenceRenderContext object. This represents the space between the end of the sequence and the end of the rendering area.

Returns:

The TrailingBorder value

getFont

Font getFont()

Gets the Font attribute of the SequenceRenderContext object

Returns:

The Font value