SQLUnigeneFactory (biojava-legacy 1.9.5 API)

java.lang.Object
- org.biojava.bio.program.unigene.SQLUnigeneFactory

All Implemented Interfaces:

UnigeneFactory
```
public class SQLUnigeneFactory
extends Object
implements UnigeneFactory
```
An implementatoin of UnigeneFactory that manages it's data in an SQL database.

This class is for developers and power-users. Usually you will not use this class directly, but rather use UnigeneTools.loadDatabase() with a jdbc URL.

This class will store unigene data in a relational database with a schema defined by the resource src/org/biojava/bio/program/unigene/createUnigene.sql and currently only realy supports mysql. To import data to a newly created database, repeatedly call addCluster() on the UnigeneDB you get back.

Author:

Matthew Pocock

Constructor Summary

Constructors
Constructor Description

SQLUnigeneFactory()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`boolean`	`canAccept(URL dbURL)`	Accepts all URLs that are of the jdbc protocol.
`UnigeneDB`	`createUnigene(URL dbURL)`
`UnigeneDB`	`loadUnigene(URL dbURL)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - SQLUnigeneFactory
```
public SQLUnigeneFactory()
```
- Method Detail
  - canAccept
```
public boolean canAccept(URL dbURL)
```
    Accepts all URLs that are of the jdbc protocol.
    
    Specified by:
    
    canAccept in interface UnigeneFactory
  - loadUnigene
```
public UnigeneDB loadUnigene(URL dbURL)
                      throws BioException
```
    Specified by:
    
    loadUnigene in interface UnigeneFactory
    
    Throws:
    
    BioException
  - createUnigene
```
public UnigeneDB createUnigene(URL dbURL)
                        throws BioException
```
    Specified by:
    
    createUnigene in interface UnigeneFactory
    
    Throws:
    
    BioException