Package org.biojava.bio.seq.db

Class SequenceDBWrapper

java.lang.Object

org.biojava.utils.AbstractChangeable

org.biojava.bio.seq.db.AbstractSequenceDB

org.biojava.bio.seq.db.SequenceDBWrapper

All Implemented Interfaces:

Serializable, SequenceDB, SequenceDBLite, Changeable

Direct Known Subclasses:

CachingSequenceDB, SubSequenceDB, ViewingSequenceDB

public abstract class SequenceDBWrapper
extends AbstractSequenceDB
implements Serializable

An abstract implementation of SequenceDB that wraps up another database.

Author:

Matthew Pocock

See Also:

Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
protected class	SequenceDBWrapper.SequencesForwarder

Field Summary

Fields inherited from interface org.biojava.bio.seq.db.SequenceDBLite

SEQUENCES

Constructor Summary

Constructors

Constructor	Description
SequenceDBWrapper(SequenceDB parent)

Method Summary

Modifier and Type	Method	Description
protected ChangeSupport	getChangeSupport(ChangeType ct)	Called to retrieve the ChangeSupport for this object.
SequenceDB	getParent()	Return the parent SequenceDB.

Methods inherited from class org.biojava.bio.seq.db.AbstractSequenceDB

addSequence, filter, removeSequence, sequenceIterator

Methods inherited from class org.biojava.utils.AbstractChangeable

addChangeListener, addChangeListener, generateChangeSupport, hasListeners, hasListeners, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biojava.utils.Changeable

addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from interface org.biojava.bio.seq.db.SequenceDB

ids

Methods inherited from interface org.biojava.bio.seq.db.SequenceDBLite

getName, getSequence

Constructor Detail

SequenceDBWrapper

public SequenceDBWrapper(SequenceDB parent)

Method Detail

getChangeSupport

protected ChangeSupport getChangeSupport(ChangeType ct)

Description copied from class: AbstractChangeable

Called to retrieve the ChangeSupport for this object.

Your implementation of this method should have the following structure:

 ChangeSupport cs = super.getChangeSupport(ct);

 if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) {
   someForwarder = new ChangeForwarder(...

   this.stateVariable.addChangeListener(someForwarder, VariableInterface.AChange);
 }

 return cs;
 

It is usual for the forwarding listeners (someForwarder in this example) to be transient and lazily instantiated. Be sure to register & unregister the forwarder in the code that does the ChangeEvent handling in setter methods.

Overrides:

getChangeSupport in class AbstractChangeable

getParent

public SequenceDB getParent()

Return the parent SequenceDB.

Returns:

the parent SequenceDB