Class ViewingSequenceDB

  • All Implemented Interfaces:
    Serializable, SequenceDB, SequenceDBLite, Changeable

    public class ViewingSequenceDB
    extends SequenceDBWrapper
    SequenceDB implementation that returns new SequenceView instances wrapping the sequences in an underlying database. One appropriate use of this would be to wrap a DB in one of these and then wrap this in an annotating db so that the annotation is added to views, not the underlying sequences.
    Matthew Pocock
    See Also:
    Serialized Form
    • Constructor Detail

      • ViewingSequenceDB

        public ViewingSequenceDB​(SequenceDB parent)
        Create a new ViewingSequenceDB that views the sequences in parent.
        parent - the SequenceDB to view
    • Method Detail

      • getName

        public String getName()
        Description copied from interface: SequenceDBLite
        Get the name of this sequence database.
        the name of the sequence database, which may be null.
      • ids

        public Set ids()
        Description copied from interface: SequenceDB
        Get an immutable set of all of the IDs in the database. The ids are legal arguments to getSequence.
        a Set of ids - at the moment, strings