Package org.biojava.bio.seq.db.flat

Class FlatSequenceDBProvider

java.lang.Object

org.biojava.bio.seq.db.flat.FlatSequenceDBProvider

All Implemented Interfaces:

SequenceDBProvider

public class FlatSequenceDBProvider
extends Object
implements SequenceDBProvider

FlatSequenceDBProvider directory-services plugin for flatfile databases. This class is instantiated automatically by the directory-services code, and is not of direct interest to users.

Author:

Keith James

Constructor Summary

Constructors

Constructor	Description
FlatSequenceDBProvider()

Method Summary

Modifier and Type	Method	Description
String	getName()	The name of this provider.
SequenceDBLite	getSequenceDB(Map config)	Get a sequence database.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FlatSequenceDBProvider

public FlatSequenceDBProvider()

Method Detail

getName

public String getName()

Description copied from interface: SequenceDBProvider

The name of this provider.

Specified by:

getName in interface SequenceDBProvider

Returns:

the provider's name.

getSequenceDB

public SequenceDBLite getSequenceDB(Map config)
                             throws RegistryException,
                                    BioException

Description copied from interface: SequenceDBProvider

Get a sequence database.

Specified by:

getSequenceDB in interface SequenceDBProvider

Parameters:

config - a Map containing key-value pairs identifying the database to resolve.

Returns:

a SequenceDBLite that was resolved.

Throws:

RegistryException

BioException