Package org.biojava.directory
Interface SequenceDBProvider
-
- All Known Implementing Classes:
BioFetchSequenceDBProvider
,BioSQLSequenceDBProvider
,FlatSequenceDBProvider
public interface SequenceDBProvider
Interfaces for named resources that can provide sequences via a database given some configuration information as defined by the OBDA standard.- Author:
- Thomas Down, Keith James, Matthew Pocock
-
-
Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description String
getName()
The name of this provider.SequenceDBLite
getSequenceDB(Map config)
Get a sequence database.
-
-
-
Method Detail
-
getSequenceDB
SequenceDBLite getSequenceDB(Map config) throws RegistryException, BioException
Get a sequence database.- Parameters:
config
- a Map containing key-value pairs identifying the database to resolve.- Returns:
- a SequenceDBLite that was resolved.
- Throws:
RegistryException
BioException
-
-