Class SequenceDBSequenceBuilder

  • All Implemented Interfaces:
    SeqIOListener, SequenceBuilder

    public class SequenceDBSequenceBuilder
    extends SequenceBuilderBase
    This SequenceBuilder has a variety of modes of operation. It can take a sequence from an existing SequenceDB and apply annotations to it.

    If the SequenceDB has persistence, then it can also create a sequence in the sequenceDB and apply the annotation to that. However, performance under those circumstances can vary depending on how well the persistent SequenceDB handles this.

    Following the introduction of biojavax persistence is handled by Hibernate refer to BioSQLRichObjectBuilder

    David Huen