Open Bio Sequence Database Access (OBDA) registry support.
Interface Summary Interface Description RegistryConfigurationThe BioDirectory Registry is a simple system for specifying where to find services which provide sequence databases. SequenceDBProviderInterfaces for named resources that can provide sequences via a database given some configuration information as defined by the OBDA standard.
Class Summary Class Description OBDARegistryParserThis class encapsulates all the parsing of the OBDA registry configuration file. Registry
Registryis a factory which gets implementations of the BioJava
RegistryConfiguration.CompositeA RegistryConfiguration that allows you to treat other configurations as providing important or default configuration information. RegistryConfiguration.ImplA simple implementation of RegistryConfiguration backed by a Map. SystemRegistryA registry that loads up the standard biodirectory files.
Exception Summary Exception Description ProviderNotFoundException
ProviderNotFoundExceptionis thrown when a sequence database provider can not be located.
RegistryExceptionthrown when the registry cannot find an implementation of a requested