Package org.biojavax.bio.seq

Interface RichSequenceIterator

All Superinterfaces:

BioEntryIterator, SequenceIterator

All Known Implementing Classes:

HashedFastaIterator, RichSequence.IOTools.SingleRichSeqIterator, RichStreamReader

public interface RichSequenceIterator
extends BioEntryIterator, SequenceIterator

Essentially the same as SequenceIterator. It provides a new method that returns RichSequence objects without the need for explicit casting. Implementations of this interface should always return RichSequence objects for both the nextSequence() and nextRichSequence() methods.

Since:

1.5

Author:

Mark Schreiber, Richard Holland

See Also:

SequenceIterator

Method Summary

Modifier and Type	Method	Description
RichSequence	nextRichSequence()

Methods inherited from interface org.biojavax.bio.BioEntryIterator

hasNext, nextBioEntry

Methods inherited from interface org.biojava.bio.seq.SequenceIterator

hasNext, nextSequence

Method Detail

nextRichSequence

RichSequence nextRichSequence()
                       throws NoSuchElementException,
                              BioException

Throws:

NoSuchElementException

BioException