Hierarchy For Package org.biojavax.bio.seq

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • org.biojava.utils.AbstractChangeable (implements org.biojava.utils.Changeable)
    • org.biojavax.bio.SimpleBioEntry (implements org.biojavax.bio.BioEntry)
      • org.biojavax.bio.seq.ThinRichSequence (implements org.biojavax.bio.seq.RichSequence)
        • org.biojavax.bio.seq.SimpleRichSequence
    • org.biojavax.bio.seq.SimpleRichFeature (implements org.biojavax.bio.seq.RichFeature)
    • org.biojavax.bio.seq.SimpleRichFeatureRelationship (implements org.biojavax.bio.seq.RichFeatureRelationship)
    • org.biojavax.bio.seq.SimpleRichLocation (implements org.biojavax.bio.seq.RichLocation)
      • org.biojavax.bio.seq.CompoundRichLocation (implements org.biojavax.bio.seq.RichLocation)
        • org.biojavax.bio.seq.MultiSourceCompoundRichLocation (implements org.biojavax.bio.seq.RichLocation)
  • org.biojavax.bio.seq.DummyRichSequenceHandler (implements org.biojavax.bio.seq.RichSequenceHandler)
  • org.biojava.bio.seq.Feature.Template (implements java.lang.Cloneable, java.io.Serializable)
    • org.biojavax.bio.seq.RichFeature.Template
  • org.biojavax.bio.seq.InfinitelyAmbiguousSymbolList (implements org.biojava.bio.symbol.SymbolList)
  • org.biojavax.bio.seq.PositionResolver.AverageResolver (implements org.biojavax.bio.seq.PositionResolver)
  • org.biojavax.bio.seq.PositionResolver.MaximalResolver (implements org.biojavax.bio.seq.PositionResolver)
  • org.biojavax.bio.seq.PositionResolver.MinimalResolver (implements org.biojavax.bio.seq.PositionResolver)
  • org.biojavax.bio.seq.RichFeature.Tools
  • org.biojavax.bio.seq.RichLocation.Strand (implements java.lang.Comparable<T>)
  • org.biojavax.bio.seq.RichLocation.Tools
  • org.biojavax.bio.seq.RichSequence.IOTools
  • org.biojavax.bio.seq.RichSequence.IOTools.SingleRichSeqIterator (implements org.biojavax.bio.seq.RichSequenceIterator)
  • org.biojavax.bio.seq.RichSequence.Terms
  • org.biojavax.bio.seq.RichSequence.Tools
  • org.biojavax.bio.seq.SimplePosition (implements org.biojavax.bio.seq.Position)
  • org.biojava.utils.Unchangeable (implements org.biojava.utils.Changeable)
    • org.biojavax.bio.seq.EmptyRichLocation (implements org.biojavax.bio.seq.RichLocation)

Interface Hierarchy

• org.biojavax.bio.BioEntryIterator
  • org.biojavax.bio.seq.RichSequenceIterator (also extends org.biojava.bio.seq.SequenceIterator)
• org.biojava.utils.Changeable
  • org.biojava.bio.Annotatable
    • org.biojava.bio.seq.Feature (also extends org.biojava.bio.seq.FeatureHolder)
      • org.biojava.bio.seq.StrandedFeature
        • org.biojavax.bio.seq.RichFeature (also extends java.lang.Comparable<T>, org.biojavax.RankedCrossRefable, org.biojavax.RichAnnotatable, org.biojavax.bio.seq.RichFeatureRelationshipHolder)
    • org.biojavax.RichAnnotatable
      • org.biojavax.bio.BioEntry (also extends org.biojava.utils.Changeable, java.lang.Comparable<T>, org.biojavax.RankedCrossRefable)
        • org.biojavax.bio.seq.RichSequence (also extends org.biojava.bio.seq.Sequence)
      • org.biojavax.bio.seq.RichFeature (also extends java.lang.Comparable<T>, org.biojavax.RankedCrossRefable, org.biojavax.bio.seq.RichFeatureRelationshipHolder, org.biojava.bio.seq.StrandedFeature)
      • org.biojavax.bio.seq.RichLocation (also extends java.lang.Comparable<T>, org.biojava.bio.symbol.Location)
    • org.biojava.bio.seq.Sequence (also extends org.biojava.bio.seq.FeatureHolder, org.biojava.bio.symbol.SymbolList)
      • org.biojavax.bio.seq.RichSequence (also extends org.biojavax.bio.BioEntry)
  • org.biojavax.bio.BioEntry (also extends java.lang.Comparable<T>, org.biojavax.RankedCrossRefable, org.biojavax.RichAnnotatable)
    • org.biojavax.bio.seq.RichSequence (also extends org.biojava.bio.seq.Sequence)
  • org.biojava.bio.seq.FeatureHolder
    • org.biojava.bio.seq.Feature (also extends org.biojava.bio.Annotatable)
      • org.biojava.bio.seq.StrandedFeature
        • org.biojavax.bio.seq.RichFeature (also extends java.lang.Comparable<T>, org.biojavax.RankedCrossRefable, org.biojavax.RichAnnotatable, org.biojavax.bio.seq.RichFeatureRelationshipHolder)
    • org.biojava.bio.seq.Sequence (also extends org.biojava.bio.Annotatable, org.biojava.bio.symbol.SymbolList)
      • org.biojavax.bio.seq.RichSequence (also extends org.biojavax.bio.BioEntry)
  • org.biojavax.RankedCrossRefable
    • org.biojavax.bio.BioEntry (also extends org.biojava.utils.Changeable, java.lang.Comparable<T>, org.biojavax.RichAnnotatable)
      • org.biojavax.bio.seq.RichSequence (also extends org.biojava.bio.seq.Sequence)
    • org.biojavax.bio.seq.RichFeature (also extends java.lang.Comparable<T>, org.biojavax.RichAnnotatable, org.biojavax.bio.seq.RichFeatureRelationshipHolder, org.biojava.bio.seq.StrandedFeature)
  • org.biojavax.bio.seq.RichFeatureRelationship (also extends java.lang.Comparable<T>)
  • org.biojava.bio.symbol.SymbolList
    • org.biojava.bio.seq.Sequence (also extends org.biojava.bio.Annotatable, org.biojava.bio.seq.FeatureHolder)
      • org.biojavax.bio.seq.RichSequence (also extends org.biojavax.bio.BioEntry)
• java.lang.Comparable<T>
  • org.biojavax.bio.BioEntry (also extends org.biojava.utils.Changeable, org.biojavax.RankedCrossRefable, org.biojavax.RichAnnotatable)
    • org.biojavax.bio.seq.RichSequence (also extends org.biojava.bio.seq.Sequence)
  • org.biojavax.bio.seq.RichFeature (also extends org.biojavax.RankedCrossRefable, org.biojavax.RichAnnotatable, org.biojavax.bio.seq.RichFeatureRelationshipHolder, org.biojava.bio.seq.StrandedFeature)
  • org.biojavax.bio.seq.RichFeatureRelationship (also extends org.biojava.utils.Changeable)
  • org.biojavax.bio.seq.RichLocation (also extends org.biojava.bio.symbol.Location, org.biojavax.RichAnnotatable)
• org.biojava.bio.symbol.Location
  • org.biojavax.bio.seq.RichLocation (also extends java.lang.Comparable<T>, org.biojavax.RichAnnotatable)
• org.biojavax.bio.seq.Position
• org.biojavax.bio.seq.PositionResolver
• org.biojavax.bio.seq.RichFeatureRelationshipHolder
  • org.biojavax.bio.seq.RichFeature (also extends java.lang.Comparable<T>, org.biojavax.RankedCrossRefable, org.biojavax.RichAnnotatable, org.biojava.bio.seq.StrandedFeature)
• org.biojavax.bio.seq.RichSequenceHandler
• org.biojava.bio.seq.SequenceIterator
  • org.biojavax.bio.seq.RichSequenceIterator (also extends org.biojavax.bio.BioEntryIterator)