Package org.biojavax.bio.seq.io

Class EMBLxmlFormat.Terms

java.lang.Object

org.biojavax.bio.seq.RichSequence.Terms

org.biojavax.bio.seq.io.EMBLxmlFormat.Terms

Enclosing class:

EMBLxmlFormat

public static class EMBLxmlFormat.Terms
extends RichSequence.Terms

Implements some EMBLxml-specific terms.

Field Summary

Fields inherited from class org.biojavax.bio.seq.RichSequence.Terms

DOI_KEY, MEDLINE_KEY, PLASMID_KEY, PUBMED_KEY, SPECIES_KEY, STRAIN_KEY, TISSUE_KEY, TRANSPOSON_KEY

Constructor Summary

Constructors

Constructor	Description
Terms()

Method Summary

Modifier and Type	Method	Description
static ComparableTerm	getDataClassTerm()	Getter for the Ensembl-specific 'dataClass' term
static ComparableTerm	getEMBLxmlTerm()	Getter for the EMBLxml term
static ComparableTerm	getProjectAccessionTerm()	Getter for the ProjectAccession term
static ComparableTerm	getStatusDateTerm()	Getter for the StatusDate term
static ComparableTerm	getStatusTerm()	Getter for the Status term
static ComparableTerm	getSubmitterAccessionTerm()	Getter for the SubmitterAccession term
static ComparableTerm	getSubmitterVersionTerm()	Getter for the SubmitterVersion term
static ComparableTerm	getSubmitterWgsVersionTerm()	Getter for the SubmitterWgsVersion term

Methods inherited from class org.biojavax.bio.seq.RichSequence.Terms

getAdditionalAccessionTerm, getCopyrightTerm, getDateAnnotatedTerm, getDateCreatedTerm, getDateUpdatedTerm, getFeatureDescTerm, getFTIdTerm, getGeneNameTerm, getGeneSynonymTerm, getKeywordTerm, getMolTypeTerm, getOrderedLocusNameTerm, getORFNameTerm, getOrganelleTerm, getPlasmidTerm, getRelAnnotatedTerm, getRelCreatedTerm, getRelUpdatedTerm, getSpeciesTerm, getStrainTerm, getStrandedTerm, getTissueTerm, getTransposonTerm

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Terms

public Terms()

Method Detail

getSubmitterAccessionTerm

public static ComparableTerm getSubmitterAccessionTerm()

Getter for the SubmitterAccession term

Returns:

The SubmitterAccession Term

getSubmitterVersionTerm

public static ComparableTerm getSubmitterVersionTerm()

Getter for the SubmitterVersion term

Returns:

The SubmitterVersion Term

getSubmitterWgsVersionTerm

public static ComparableTerm getSubmitterWgsVersionTerm()

Getter for the SubmitterWgsVersion term

Returns:

The SubmitterWgsVersion Term

getStatusTerm

public static ComparableTerm getStatusTerm()

Getter for the Status term

Returns:

The Status Term

getStatusDateTerm

public static ComparableTerm getStatusDateTerm()

Getter for the StatusDate term

Returns:

The StatusDate Term

getProjectAccessionTerm

public static ComparableTerm getProjectAccessionTerm()

Getter for the ProjectAccession term

Returns:

The ProjectAccession Term

getEMBLxmlTerm

public static ComparableTerm getEMBLxmlTerm()

Getter for the EMBLxml term

Returns:

The EMBLxml Term

getDataClassTerm

public static ComparableTerm getDataClassTerm()

Getter for the Ensembl-specific 'dataClass' term

Returns:

The data class Term