Hierarchy For Package org.biojavax.bio.seq.io

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • org.biojavax.bio.seq.io.FastaHeader
  • org.biojavax.bio.seq.io.GenbankLocationParser
  • org.biojavax.bio.seq.io.HashedFastaIterator (implements org.biojavax.bio.seq.RichSequenceIterator)
  • java.io.InputStream (implements java.io.Closeable)
    • java.io.FilterInputStream
      • java.io.BufferedInputStream
        • org.biojavax.bio.seq.io.DebuggingRichSeqIOListener (implements org.biojavax.bio.seq.io.RichSeqIOListener)
  • org.biojavax.bio.seq.io.RichSeqIOAdapter (implements org.biojavax.bio.seq.io.RichSeqIOListener)
    • org.biojavax.bio.seq.io.SimpleRichSequenceBuilder (implements org.biojavax.bio.seq.io.RichSequenceBuilder)
  • org.biojavax.bio.seq.RichSequence.Terms
    • org.biojavax.bio.seq.io.EMBLFormat.Terms
    • org.biojavax.bio.seq.io.EMBLxmlFormat.Terms
    • org.biojavax.bio.seq.io.GenbankFormat.Terms
    • org.biojavax.bio.seq.io.INSDseqFormat.Terms
    • org.biojavax.bio.seq.io.UniProtFormat.Terms
    • org.biojavax.bio.seq.io.UniProtXMLFormat.Terms
  • org.biojavax.bio.seq.io.RichSequenceFormat.BasicFormat (implements org.biojavax.bio.seq.io.RichSequenceFormat)
    • org.biojavax.bio.seq.io.EMBLxmlFormat
    • org.biojavax.bio.seq.io.INSDseqFormat
    • org.biojavax.bio.seq.io.RichSequenceFormat.HeaderlessFormat
      • org.biojavax.bio.seq.io.EMBLFormat
      • org.biojavax.bio.seq.io.FastaFormat
      • org.biojavax.bio.seq.io.GenbankFormat
      • org.biojavax.bio.seq.io.UniProtFormat
    • org.biojavax.bio.seq.io.UniProtXMLFormat
  • org.biojavax.bio.seq.io.RichStreamReader (implements org.biojavax.bio.seq.RichSequenceIterator)
  • org.biojavax.bio.seq.io.RichStreamWriter
  • org.biojavax.bio.seq.io.SimpleRichSequenceBuilderFactory (implements org.biojavax.bio.seq.io.RichSequenceBuilderFactory)
  • org.biojavax.bio.seq.io.UniProtCommentParser
  • org.biojavax.bio.seq.io.UniProtCommentParser.Event
  • org.biojavax.bio.seq.io.UniProtCommentParser.Interaction
  • org.biojavax.bio.seq.io.UniProtCommentParser.Isoform
  • org.biojavax.bio.seq.io.UniProtCommentParser.SeqCaution
  • org.biojavax.bio.seq.io.UniProtLocationParser

Interface Hierarchy

• org.biojava.bio.seq.io.SeqIOListener
  • org.biojavax.bio.seq.io.RichSeqIOListener
    • org.biojavax.bio.seq.io.RichSequenceBuilder (also extends org.biojava.bio.seq.io.SequenceBuilder)
  • org.biojava.bio.seq.io.SequenceBuilder
    • org.biojavax.bio.seq.io.RichSequenceBuilder (also extends org.biojavax.bio.seq.io.RichSeqIOListener)
• org.biojava.bio.seq.io.SequenceBuilderFactory
  • org.biojavax.bio.seq.io.RichSequenceBuilderFactory
• org.biojava.bio.seq.io.SequenceFormat
  • org.biojavax.bio.seq.io.RichSequenceFormat