Package org.biojavax.bio.seq.io

Class UniProtFormat.Terms

java.lang.Object

org.biojavax.bio.seq.RichSequence.Terms

org.biojavax.bio.seq.io.UniProtFormat.Terms

Enclosing class:

UniProtFormat

public static class UniProtFormat.Terms
extends RichSequence.Terms

Implements some UniProt-specific terms.

Field Summary

Fields inherited from class org.biojavax.bio.seq.RichSequence.Terms

DOI_KEY, MEDLINE_KEY, PLASMID_KEY, PUBMED_KEY, SPECIES_KEY, STRAIN_KEY, TISSUE_KEY, TRANSPOSON_KEY

Constructor Summary

Constructors

Constructor	Description
Terms()

Method Summary

Modifier and Type	Method	Description
static ComparableTerm	getProteinExistsTerm()	Getter for the protein exists term
static ComparableTerm	getUniProtDBNameTerm()	Getter for the UniProt combined database term
static ComparableTerm	getUniProtTerm()	Getter for the UniProt term

Methods inherited from class org.biojavax.bio.seq.RichSequence.Terms

getAdditionalAccessionTerm, getCopyrightTerm, getDataClassTerm, getDateAnnotatedTerm, getDateCreatedTerm, getDateUpdatedTerm, getFeatureDescTerm, getFTIdTerm, getGeneNameTerm, getGeneSynonymTerm, getKeywordTerm, getMolTypeTerm, getOrderedLocusNameTerm, getORFNameTerm, getOrganelleTerm, getPlasmidTerm, getRelAnnotatedTerm, getRelCreatedTerm, getRelUpdatedTerm, getSpeciesTerm, getStrainTerm, getStrandedTerm, getTissueTerm, getTransposonTerm

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Terms

public Terms()

Method Detail

getUniProtTerm

public static ComparableTerm getUniProtTerm()

Getter for the UniProt term

Returns:

The UniProt Term

getUniProtDBNameTerm

public static ComparableTerm getUniProtDBNameTerm()

Getter for the UniProt combined database term

Returns:

The combined database for UniProt Term

getProteinExistsTerm

public static ComparableTerm getProteinExistsTerm()

Getter for the protein exists term

Returns:

The protein exists Term